{"id":1548,"date":"2013-12-23T12:13:01","date_gmt":"2013-12-23T12:13:01","guid":{"rendered":"http:\/\/biosi.subsite.cf.ac.uk\/biosi\/kille-morgan\/neestimator-v2-re-implementation-of-software-for-the-estimation-of-contemporary-effective-population-size-ne-from-genetic-data\/"},"modified":"2015-06-19T09:50:11","modified_gmt":"2015-06-19T09:50:11","slug":"neestimator-v2-re-implementation-of-software-for-the-estimation-of-contemporary-effective-population-size-ne-from-genetic-data","status":"publish","type":"post","link":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/2013\/12\/23\/neestimator-v2-re-implementation-of-software-for-the-estimation-of-contemporary-effective-population-size-ne-from-genetic-data\/","title":{"rendered":"NeEstimator\u00a0v2: re-implementation of software for the estimation of contemporary effective population size ( Ne) from genetic data"},"content":{"rendered":"<p><a href=\"http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/1755-0998.12157\/full\">http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/1755-0998.12157\/full<\/a><br \/>\n<strong>NeEstimator v2: re-implementation of software for the estimation of contemporary effective population size (<em>Ne<\/em>) from genetic data<\/strong><br \/>\nneestimator v2 is a completely revised and updated implementation of software that produces estimates of contemporary effective population size, using several different methods and a single input file. neestimator v2 includes three single-sample estimators (updated versions of the linkage disequilibrium and heterozygote-excess methods, and a new method based on molecular coancestry), as well as the two-sample (moment-based temporal) method. New features include the following: (i) an improved method for accounting for missing data; (ii) options for screening out rare alleles; (iii) confidence intervals for all methods; (iv) the ability to analyse data sets with large numbers of genetic markers (10 000 or more); (v) options for batch processing large numbers of different data sets, which will facilitate cross-method comparisons using simulated data; and (vi) correction for temporal estimates when individuals sampled are not removed from the population (Plan I sampling). The user is given considerable control over input data and composition, and format of output files. The freely available software has a new JAVA interface and runs under MacOS, Linux and Windows.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>http:\/\/onlinelibrary.wiley.com\/doi\/10.1111\/1755-0998.12157\/full NeEstimator v2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data neestimator v2 is a completely revised and updated implementation of software that produces estimates of contemporary effective population size, using several different methods and a single input file. neestimator v2 includes three single-sample estimators (updated versions of<\/p>\n","protected":false},"author":3463,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[8],"tags":[],"class_list":["post-1548","post","type-post","status-publish","format-standard","hentry","category-hot-papers"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/p6t6rP-oY","meta_box":[],"_links":{"self":[{"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/posts\/1548","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/users\/3463"}],"replies":[{"embeddable":true,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/comments?post=1548"}],"version-history":[{"count":1,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/posts\/1548\/revisions"}],"predecessor-version":[{"id":2573,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/posts\/1548\/revisions\/2573"}],"wp:attachment":[{"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/media?parent=1548"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/categories?post=1548"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/sites.cardiff.ac.uk\/kille-morgan\/wp-json\/wp\/v2\/tags?post=1548"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}